Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

iTerm2 profile with mapped MacOS shortcuts

RNArtist allows you to design and paint your RNA 2D structures interactively. Coupled with the 3D viewer UCSF Chimera, use your 2D as a map to explore RNA 3D architectures.

Fig adds autocomplete to your terminal.

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by first scanning a single input sequence to identify regions …

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Nanopore demultiplexing, QC and alignment pipeline

GFF Annotation Paser (GAP) is a tool for parsing Gencode/Ensembl GTF and NCBI GFF3 genome annotation files.

AI education materials for Chinese students, teachers and IT professionals.

DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in single-cell RNA-sequencing data.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

This Snakemake pipeline implements the GATK best-practices workflow

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Bayesian haplotype-based genetic polymorphism discovery and genotyping.

Public repository for ShapeMapper 2 releases

RNA Secondary Structure DataBase

Discrete Distributional Differential Expression