1.14.2-drbergman-2.3.1

What's Changed

• Fix division displacement my pc by @drbergman in #38
• Fix dist to edge edge cases my pc by @drbergman in #39
• always check sbml_filename exists and set properly by @drbergman in #40
• Bump by @drbergman in #42
• 1.14.2-drbergman-2.3.1 by @drbergman in #41

Full Changelog: 1.14.2-drbergman-2.3.0...1.14.2-drbergman-2.3.1

1.14.2-drbergman-2.3.0

What's Changed

• better warnings/error messages by @drbergman in #21
• delete duplicate elapsed time in phase by @drbergman in #22
• delete duplicate elapsed time in phase from saves by @drbergman in #19
• add current cycle phase index to signals by @drbergman in #20
• attachment signals by @drbergman in #23
• fix bug by @drbergman in #26
• fix detachments by @drbergman in #29
• Feature extended asym div my physicell by @drbergman in #32
• Merge dgedris by @drbergman in #34 (Thanks @dgedris!)
  • parent and generation
  • elapsed time in phase as signal
• Substrate csv omit voxels my physicell by @drbergman in #37
• dev bump by @drbergman in #17

Full Changelog: 1.14.2-drbergman-2.2.1...1.14.2-drbergman-2.3.0

1.14.2-drbergman-2.2.1

Copy input files into output with the name used by the user as well as the default name.

What's Changed

• copy used and default file names by @drbergman in #16

Full Changelog: 1.14.2-drbergman-2.2.0...1.14.2-drbergman-2.2.1

1.14.2-drbergman-2.2.0

What's Changed

Breaking changes:

Major changes:

• copy config to output now part of core by @drbergman in #14

Minor changes:

• copy files correctly by @drbergman in #15

Full Changelog: 1.14.2-drbergman-2.1.2...1.14.2-drbergman-2.2.0

1.14.2-drbergman-2.1.2

display error on bad behavior values

Full Changelog: 1.14.2-drbergman-2.1.1...1.14.2-drbergman-2.1.2

1.14.2-drbergman-2.1.1

All sample projects use extended rules

Full Changelog: 1.14.2-drbergman-2.1.0...1.14.2-drbergman-2.1.1

1.14.2-drbergman-2.1.0

Copy rules file to output folder and also export parsed CSVs to output folder.

What's Changed

• My physicell rules upgrade displays by @drbergman in #10

Full Changelog: 1.14.2-drbergman-2.0.0...1.14.2-drbergman-2.1.0

1.14.2-drbergman-2.0.0

Introduce my extended rules. See the README in sample_projects/template_xml_rules_extended/README.md. Update every project to use these rules.

Also, finally have every project use the ArgumentParser.

What's Changed

• remove excess getopt.h by @drbergman in #8
• rules upgrade by @drbergman in #9

Full Changelog: 1.14.2-drbergman-1.3.2...1.14.2-drbergman-2.0.0

1.14.2-drbergman-1.3.2

actually throws error on asym div probabilities summing to >1.0 rather than quietly printing the error message and returning a 0.

Full Changelog: 1.14.2-drbergman-1.3.1...1.14.2-drbergman-1.3.2

1.14.2-drbergman-1.3.1

Fixes bug that could allow for the intracellular file to be passed in, but still use the config file to set the files for a given intracellular model. In other words, this enforces that you must pick either the -n flag to set all your intracellular model files or only use the config file. An exception is made for MaBoSS intracellular models since those are not yet supported in this manner.

In other words, if you use the -n flag to set an intracellular mappings file, DO NOT include MaBoSS files in there. Instead, reference them in the config file as before.

What's Changed

• improve intracellular parsing by @drbergman in #6
• improve intracellular parsing by @drbergman in #7

Full Changelog: 1.14.2-drbergman-1.3.0...1.14.2-drbergman-1.3.1