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480a74a
Initial import of code from Databricks unsafe utils repo.
JoshRosen Apr 17, 2015
ab68e08
Begin merging the UTF8String implementations.
JoshRosen Apr 18, 2015
f03e9c1
Play around with Unsafe implementations of more string methods.
JoshRosen Apr 18, 2015
5d55cef
Add skeleton for Row implementation.
JoshRosen Apr 18, 2015
8a8f9df
Add skeleton for GeneratedAggregate integration.
JoshRosen Apr 18, 2015
1ff814d
Add reminder to free memory on iterator completion
JoshRosen Apr 18, 2015
53ba9b7
Start prototyping Java Row -> UnsafeRow converters
JoshRosen Apr 19, 2015
fc4c3a8
Sketch how the converters will be used in UnsafeGeneratedAggregate
JoshRosen Apr 19, 2015
1a483c5
First version that passes some aggregation tests:
JoshRosen Apr 19, 2015
079f1bf
Some clarification of the BytesToBytesMap.lookup() / set() contract.
JoshRosen Apr 19, 2015
f764d13
Simplify address + length calculation in Location.
JoshRosen Apr 19, 2015
c754ae1
Now that the store*() contract has been stregthened, we can remove an…
JoshRosen Apr 19, 2015
ae39694
Add finalizer as "cleanup method of last resort"
JoshRosen Apr 19, 2015
c7f0b56
Reuse UnsafeRow pointer in UnsafeRowConverter
JoshRosen Apr 20, 2015
62ab054
Optimize for fact that get() is only called on String columns.
JoshRosen Apr 20, 2015
c55bf66
Free buffer once iterator has been fully consumed.
JoshRosen Apr 20, 2015
738fa33
Add feature flag to guard UnsafeGeneratedAggregate
JoshRosen Apr 20, 2015
c1b3813
Fix bug in UnsafeMemoryAllocator.free():
JoshRosen Apr 20, 2015
7df6008
Optimizations related to zeroing out memory:
JoshRosen Apr 21, 2015
58ac393
Use UNSAFE allocator in GeneratedAggregate (TODO: make this configura…
JoshRosen Apr 21, 2015
d2bb986
Update to implement new Row methods added upstream
JoshRosen Apr 22, 2015
b3eaccd
Extract aggregation map into its own class.
JoshRosen Apr 22, 2015
bade966
Comment update (bumping to refresh GitHub cache...)
JoshRosen Apr 22, 2015
d85eeff
Add basic sanity test for UnsafeFixedWidthAggregationMap
JoshRosen Apr 22, 2015
1f4b716
Merge Unsafe code into the regular GeneratedAggregate, guarded by a
JoshRosen Apr 22, 2015
92d5a06
Address a number of minor code review comments.
JoshRosen Apr 23, 2015
628f936
Use ints intead of longs for indexing.
JoshRosen Apr 23, 2015
23a440a
Bump up default hash map size
JoshRosen Apr 23, 2015
765243d
Enable optional performance metrics for hash map.
JoshRosen Apr 23, 2015
b26f1d3
Fix bug in murmur hash implementation.
JoshRosen Apr 23, 2015
49aed30
More long -> int conversion.
JoshRosen Apr 23, 2015
29a7575
Remove debug logging
JoshRosen Apr 24, 2015
ef6b3d3
Fix a bunch of FindBugs and IntelliJ inspections
JoshRosen Apr 24, 2015
06e929d
More warning cleanup
JoshRosen Apr 24, 2015
854201a
Import and comment cleanup
JoshRosen Apr 24, 2015
f3dcbfe
More mod replacement
JoshRosen Apr 24, 2015
afe8dca
Some Javadoc cleanup
JoshRosen Apr 24, 2015
a95291e
Cleanups to string handling code
JoshRosen Apr 24, 2015
31eaabc
Lots of TODO and doc cleanup.
JoshRosen Apr 24, 2015
6ffdaa1
Null handling improvements in UnsafeRow.
JoshRosen Apr 24, 2015
9c19fc0
Add configuration options for heap vs. offheap
JoshRosen Apr 24, 2015
cde4132
Add missing pom.xml
JoshRosen Apr 26, 2015
0925847
Disable MiMa checks for new unsafe module
JoshRosen Apr 27, 2015
a8e4a3f
Introduce MemoryManager interface; add to SparkEnv.
JoshRosen Apr 28, 2015
b45f070
Don't redundantly store the offset from key to value, since we can co…
JoshRosen Apr 28, 2015
162caf7
Fix test compilation
JoshRosen Apr 28, 2015
3ca84b2
Only zero the used portion of groupingKeyConversionScratchSpace
JoshRosen Apr 28, 2015
529e571
Measure timeSpentResizing in nanoseconds instead of milliseconds.
JoshRosen Apr 28, 2015
ce3c565
More comments, formatting, and code cleanup.
JoshRosen Apr 28, 2015
78a5b84
Add logging to MemoryManager
JoshRosen Apr 28, 2015
a19e066
Rename unsafe Java test suites to match Scala test naming convention.
JoshRosen Apr 28, 2015
de5e001
Fix debug vs. trace in logging message.
JoshRosen Apr 28, 2015
6e4b192
Remove an unused method from ByteArrayMethods.
JoshRosen Apr 28, 2015
70a39e4
Split MemoryManager into ExecutorMemoryManager and TaskMemoryManager:
JoshRosen Apr 28, 2015
50e9671
Throw memory leak warning even in case of error; add warning about co…
JoshRosen Apr 29, 2015
017b2dc
Remove BytesToBytesMap.finalize()
JoshRosen Apr 29, 2015
1bc36cc
Refactor UnsafeRowConverter to avoid unnecessary boxing.
JoshRosen Apr 29, 2015
81f34f8
Follow 'place children last' convention for GeneratedAggregate
JoshRosen Apr 29, 2015
eeee512
Add converters for Null, Boolean, Byte, and Short columns.
JoshRosen Apr 29, 2015
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First version that passes some aggregation tests:
I commented out a number of tests where we do not support the required
data types; this is only a short-term hack until I extend the planner
to understand when UnsafeGeneratedAggregate can be used.
  • Loading branch information
JoshRosen committed Apr 22, 2015
commit 1a483c5a7303d4267e5a2adb10fa23c672224361
Original file line number Diff line number Diff line change
Expand Up @@ -20,12 +20,16 @@

import org.apache.spark.sql.Row;
import org.apache.spark.sql.types.DataType;
import static org.apache.spark.sql.types.DataTypes.*;

import org.apache.spark.sql.types.StructType;
import org.apache.spark.sql.types.UTF8String;
import org.apache.spark.unsafe.PlatformDependent;
import org.apache.spark.unsafe.bitset.BitSetMethods;
import org.apache.spark.unsafe.string.UTF8StringMethods;
import scala.collection.Map;
import scala.collection.Seq;
import scala.collection.mutable.ArraySeq;

import javax.annotation.Nullable;
import java.math.BigDecimal;
Expand Down Expand Up @@ -90,6 +94,11 @@ public void setNullAt(int i) {
BitSetMethods.set(baseObject, baseOffset, i);
}

private void setNotNullAt(int i) {
assertIndexIsValid(i);
BitSetMethods.unset(baseObject, baseOffset, i);
}

@Override
public void update(int ordinal, Object value) {
assert schema != null : "schema cannot be null when calling the generic update()";
Expand All @@ -101,42 +110,49 @@ public void update(int ordinal, Object value) {
@Override
public void setInt(int ordinal, int value) {
assertIndexIsValid(ordinal);
setNotNullAt(ordinal);
PlatformDependent.UNSAFE.putInt(baseObject, getFieldOffset(ordinal), value);
}

@Override
public void setLong(int ordinal, long value) {
assertIndexIsValid(ordinal);
setNotNullAt(ordinal);
PlatformDependent.UNSAFE.putLong(baseObject, getFieldOffset(ordinal), value);
}

@Override
public void setDouble(int ordinal, double value) {
assertIndexIsValid(ordinal);
setNotNullAt(ordinal);
PlatformDependent.UNSAFE.putDouble(baseObject, getFieldOffset(ordinal), value);
}

@Override
public void setBoolean(int ordinal, boolean value) {
assertIndexIsValid(ordinal);
setNotNullAt(ordinal);
PlatformDependent.UNSAFE.putBoolean(baseObject, getFieldOffset(ordinal), value);
}

@Override
public void setShort(int ordinal, short value) {
assertIndexIsValid(ordinal);
setNotNullAt(ordinal);
PlatformDependent.UNSAFE.putShort(baseObject, getFieldOffset(ordinal), value);
}

@Override
public void setByte(int ordinal, byte value) {
assertIndexIsValid(ordinal);
setNotNullAt(ordinal);
PlatformDependent.UNSAFE.putByte(baseObject, getFieldOffset(ordinal), value);
}

@Override
public void setFloat(int ordinal, float value) {
assertIndexIsValid(ordinal);
setNotNullAt(ordinal);
PlatformDependent.UNSAFE.putFloat(baseObject, getFieldOffset(ordinal), value);
}

Expand Down Expand Up @@ -169,8 +185,23 @@ public Object apply(int i) {
@Override
public Object get(int i) {
assertIndexIsValid(i);
// TODO: dispatching based on field type
throw new UnsupportedOperationException();
final DataType dataType = schema.fields()[i].dataType();
// TODO: complete this for the remaining types
if (isNullAt(i)) {
return null;
} else if (dataType == IntegerType) {
return getInt(i);
} else if (dataType == LongType) {
return getLong(i);
} else if (dataType == DoubleType) {
return getDouble(i);
} else if (dataType == FloatType) {
return getFloat(i);
} else if (dataType == StringType) {
return getUTF8String(i);
} else {
throw new UnsupportedOperationException();
}
}

@Override
Expand Down Expand Up @@ -221,6 +252,12 @@ public double getDouble(int i) {
return PlatformDependent.UNSAFE.getDouble(baseObject, getFieldOffset(i));
}

public UTF8String getUTF8String(int i) {
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i created https://issues.apache.org/jira/browse/SPARK-7190 for utf8string backed by memory address

// TODO: this is inefficient; just doing this to make some tests pass for now; will fix later
assertIndexIsValid(i);
return UTF8String.apply(getString(i));
}

@Override
public String getString(int i) {
assertIndexIsValid(i);
Expand Down Expand Up @@ -292,25 +329,30 @@ public boolean anyNull() {

@Override
public Seq<Object> toSeq() {
// TODO
throw new UnsupportedOperationException();
final ArraySeq<Object> values = new ArraySeq<Object>(numFields);
for (int fieldNumber = 0; fieldNumber < numFields; fieldNumber++) {
values.update(fieldNumber, get(fieldNumber));
}
return values;
}

@Override
public String toString() {
return mkString("[", ",", "]");
}

@Override
public String mkString() {
// TODO
throw new UnsupportedOperationException();
return toSeq().mkString();
}

@Override
public String mkString(String sep) {
// TODO
throw new UnsupportedOperationException();
return toSeq().mkString(sep);
}

@Override
public String mkString(String start, String sep, String end) {
// TODO
throw new UnsupportedOperationException();
return toSeq().mkString(start, sep, end);
}
}
Original file line number Diff line number Diff line change
Expand Up @@ -54,8 +54,11 @@ private object UnsafeColumnWriter {
dataType match {
case IntegerType => IntUnsafeColumnWriter
case LongType => LongUnsafeColumnWriter
case FloatType => FloatUnsafeColumnWriter
case DoubleType => DoubleUnsafeColumnWriter
case StringType => StringUnsafeColumnWriter
case _ => throw new UnsupportedOperationException()
case t =>
throw new UnsupportedOperationException(s"Do not know how to write columns of type $t")
}
}
}
Expand Down Expand Up @@ -121,6 +124,33 @@ private class LongUnsafeColumnWriter private() extends PrimitiveUnsafeColumnWrit
}
private case object LongUnsafeColumnWriter extends LongUnsafeColumnWriter

private class FloatUnsafeColumnWriter private() extends PrimitiveUnsafeColumnWriter[Float] {
override def write(
value: Float,
columnNumber: Int,
row: UnsafeRow,
baseObject: Object,
baseOffset: Long,
appendCursor: Int): Int = {
row.setFloat(columnNumber, value)
0
}
}
private case object FloatUnsafeColumnWriter extends FloatUnsafeColumnWriter

private class DoubleUnsafeColumnWriter private() extends PrimitiveUnsafeColumnWriter[Double] {
override def write(
value: Double,
columnNumber: Int,
row: UnsafeRow,
baseObject: Object,
baseOffset: Long,
appendCursor: Int): Int = {
row.setDouble(columnNumber, value)
0
}
}
private case object DoubleUnsafeColumnWriter extends DoubleUnsafeColumnWriter

class UnsafeRowConverter(fieldTypes: Array[DataType]) {

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -132,11 +132,11 @@ private[sql] abstract class SparkStrategies extends QueryPlanner[SparkPlan] {
allAggregates(partialComputation) ++
allAggregates(rewrittenAggregateExpressions)) &&
codegenEnabled =>
execution.GeneratedAggregate(
execution.UnsafeGeneratedAggregate(
partial = false,
namedGroupingAttributes,
rewrittenAggregateExpressions,
execution.GeneratedAggregate(
execution.UnsafeGeneratedAggregate(
partial = true,
groupingExpressions,
partialComputation,
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -194,7 +194,7 @@ case class UnsafeGeneratedAggregate(
case o => sys.error(s"$o can't be codegened.")
}

val computationSchema = computeFunctions.flatMap(_.schema)
val computationSchema: Seq[Attribute] = computeFunctions.flatMap(_.schema)

val resultMap: Map[TreeNodeRef, Expression] =
aggregatesToCompute.zip(computeFunctions).map {
Expand Down Expand Up @@ -230,7 +230,7 @@ case class UnsafeGeneratedAggregate(
// This projection should be targeted at the current values for the group and then applied
// to a joined row of the current values with the new input row.
val updateExpressions = computeFunctions.flatMap(_.update)
val updateSchema = computeFunctions.flatMap(_.schema) ++ child.output
val updateSchema = computationSchema ++ child.output
val updateProjection = newMutableProjection(updateExpressions, updateSchema)()
log.info(s"Update Expressions: ${updateExpressions.mkString(",")}")

Expand Down Expand Up @@ -267,19 +267,25 @@ case class UnsafeGeneratedAggregate(
// We're going to need to allocate a lot of empty aggregation buffers, so let's do it
// once and keep a copy of the serialized buffer and copy it into the hash map when we see
// new keys:
val (emptyAggregationBuffer: Array[Long], numberOfColumnsInAggBuffer: Int) = {
val emptyAggregationBuffer: Array[Long] = {
val javaBuffer: MutableRow = newAggregationBuffer(EmptyRow).asInstanceOf[MutableRow]
val converter = new UnsafeRowConverter(javaBuffer.schema.fields.map(_.dataType))
val fieldTypes = StructType.fromAttributes(computationSchema).map(_.dataType).toArray
val converter = new UnsafeRowConverter(fieldTypes)
val buffer = new Array[Long](converter.getSizeRequirement(javaBuffer))
converter.writeRow(javaBuffer, buffer, PlatformDependent.LONG_ARRAY_OFFSET)
(buffer, javaBuffer.schema.fields.length)
buffer
}

// TODO: there's got got to be an actual way of obtaining this up front.
var groupProjectionSchema: StructType = null

val keyToUnsafeRowConverter: UnsafeRowConverter = {
new UnsafeRowConverter(groupProjectionSchema.fields.map(_.dataType))
new UnsafeRowConverter(groupingExpressions.map(_.dataType).toArray)
}

val aggregationBufferSchema = StructType.fromAttributes(computationSchema)
val keySchema: StructType = {
val fields = groupingExpressions.zipWithIndex.map { case (expr, idx) =>
StructField(idx.toString, expr.dataType, expr.nullable)
}
StructType(fields)
}

// Allocate some scratch space for holding the keys that we use to index into the hash map.
Expand All @@ -303,10 +309,9 @@ case class UnsafeGeneratedAggregate(
if (groupProjectionSize > unsafeRowBuffer.length) {
throw new IllegalStateException("Group projection does not fit into buffer")
}
keyToUnsafeRowConverter.writeRow(
currentGroup, unsafeRowBuffer, PlatformDependent.LONG_ARRAY_OFFSET)
val keyLengthInBytes: Int = keyToUnsafeRowConverter.writeRow(
currentGroup, unsafeRowBuffer, PlatformDependent.LONG_ARRAY_OFFSET).toInt // TODO

val keyLengthInBytes: Int = 0
val loc: BytesToBytesMap#Location =
buffers.lookup(unsafeRowBuffer, PlatformDependent.LONG_ARRAY_OFFSET, keyLengthInBytes)
if (!loc.isDefined) {
Expand All @@ -316,8 +321,6 @@ case class UnsafeGeneratedAggregate(
// size of buffers don't grow once created, as is the case for things like grabbing the
// first row's value for a string-valued column (or the shortest string)).

// TODO

loc.storeKeyAndValue(
unsafeRowBuffer,
PlatformDependent.LONG_ARRAY_OFFSET,
Expand All @@ -326,14 +329,17 @@ case class UnsafeGeneratedAggregate(
PlatformDependent.LONG_ARRAY_OFFSET,
emptyAggregationBuffer.length
)
// So that the pointers point to the value we just stored:
// TODO: reset this inside of the map so that this extra looup isn't necessary
buffers.lookup(unsafeRowBuffer, PlatformDependent.LONG_ARRAY_OFFSET, keyLengthInBytes)
}
// Reset our pointer to point to the buffer stored in the hash map
val address = loc.getValueAddress
currentBuffer.set(
address.getBaseObject,
address.getBaseOffset,
numberOfColumnsInAggBuffer,
null
aggregationBufferSchema.length,
aggregationBufferSchema
)
// Target the projection at the current aggregation buffer and then project the updated
// values.
Expand All @@ -354,15 +360,14 @@ case class UnsafeGeneratedAggregate(
key.set(
keyAddress.getBaseObject,
keyAddress.getBaseOffset,
groupProjectionSchema.fields.length,
groupProjectionSchema)
groupingExpressions.length,
keySchema)
val valueAddress = currentGroup.getValueAddress
value.set(
valueAddress.getBaseObject,
valueAddress.getBaseOffset,
numberOfColumnsInAggBuffer,
null
)
aggregationBufferSchema.length,
aggregationBufferSchema)
// TODO: once the iterator has been fully consumed, we need to free the map so that
// its off-heap memory is reclaimed. This may mean that we'll have to perform an extra
// defensive copy of the last row so that we can free that memory before returning
Expand Down
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