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480a74a
Initial import of code from Databricks unsafe utils repo.
JoshRosen Apr 17, 2015
ab68e08
Begin merging the UTF8String implementations.
JoshRosen Apr 18, 2015
f03e9c1
Play around with Unsafe implementations of more string methods.
JoshRosen Apr 18, 2015
5d55cef
Add skeleton for Row implementation.
JoshRosen Apr 18, 2015
8a8f9df
Add skeleton for GeneratedAggregate integration.
JoshRosen Apr 18, 2015
1ff814d
Add reminder to free memory on iterator completion
JoshRosen Apr 18, 2015
53ba9b7
Start prototyping Java Row -> UnsafeRow converters
JoshRosen Apr 19, 2015
fc4c3a8
Sketch how the converters will be used in UnsafeGeneratedAggregate
JoshRosen Apr 19, 2015
1a483c5
First version that passes some aggregation tests:
JoshRosen Apr 19, 2015
079f1bf
Some clarification of the BytesToBytesMap.lookup() / set() contract.
JoshRosen Apr 19, 2015
f764d13
Simplify address + length calculation in Location.
JoshRosen Apr 19, 2015
c754ae1
Now that the store*() contract has been stregthened, we can remove an…
JoshRosen Apr 19, 2015
ae39694
Add finalizer as "cleanup method of last resort"
JoshRosen Apr 19, 2015
c7f0b56
Reuse UnsafeRow pointer in UnsafeRowConverter
JoshRosen Apr 20, 2015
62ab054
Optimize for fact that get() is only called on String columns.
JoshRosen Apr 20, 2015
c55bf66
Free buffer once iterator has been fully consumed.
JoshRosen Apr 20, 2015
738fa33
Add feature flag to guard UnsafeGeneratedAggregate
JoshRosen Apr 20, 2015
c1b3813
Fix bug in UnsafeMemoryAllocator.free():
JoshRosen Apr 20, 2015
7df6008
Optimizations related to zeroing out memory:
JoshRosen Apr 21, 2015
58ac393
Use UNSAFE allocator in GeneratedAggregate (TODO: make this configura…
JoshRosen Apr 21, 2015
d2bb986
Update to implement new Row methods added upstream
JoshRosen Apr 22, 2015
b3eaccd
Extract aggregation map into its own class.
JoshRosen Apr 22, 2015
bade966
Comment update (bumping to refresh GitHub cache...)
JoshRosen Apr 22, 2015
d85eeff
Add basic sanity test for UnsafeFixedWidthAggregationMap
JoshRosen Apr 22, 2015
1f4b716
Merge Unsafe code into the regular GeneratedAggregate, guarded by a
JoshRosen Apr 22, 2015
92d5a06
Address a number of minor code review comments.
JoshRosen Apr 23, 2015
628f936
Use ints intead of longs for indexing.
JoshRosen Apr 23, 2015
23a440a
Bump up default hash map size
JoshRosen Apr 23, 2015
765243d
Enable optional performance metrics for hash map.
JoshRosen Apr 23, 2015
b26f1d3
Fix bug in murmur hash implementation.
JoshRosen Apr 23, 2015
49aed30
More long -> int conversion.
JoshRosen Apr 23, 2015
29a7575
Remove debug logging
JoshRosen Apr 24, 2015
ef6b3d3
Fix a bunch of FindBugs and IntelliJ inspections
JoshRosen Apr 24, 2015
06e929d
More warning cleanup
JoshRosen Apr 24, 2015
854201a
Import and comment cleanup
JoshRosen Apr 24, 2015
f3dcbfe
More mod replacement
JoshRosen Apr 24, 2015
afe8dca
Some Javadoc cleanup
JoshRosen Apr 24, 2015
a95291e
Cleanups to string handling code
JoshRosen Apr 24, 2015
31eaabc
Lots of TODO and doc cleanup.
JoshRosen Apr 24, 2015
6ffdaa1
Null handling improvements in UnsafeRow.
JoshRosen Apr 24, 2015
9c19fc0
Add configuration options for heap vs. offheap
JoshRosen Apr 24, 2015
cde4132
Add missing pom.xml
JoshRosen Apr 26, 2015
0925847
Disable MiMa checks for new unsafe module
JoshRosen Apr 27, 2015
a8e4a3f
Introduce MemoryManager interface; add to SparkEnv.
JoshRosen Apr 28, 2015
b45f070
Don't redundantly store the offset from key to value, since we can co…
JoshRosen Apr 28, 2015
162caf7
Fix test compilation
JoshRosen Apr 28, 2015
3ca84b2
Only zero the used portion of groupingKeyConversionScratchSpace
JoshRosen Apr 28, 2015
529e571
Measure timeSpentResizing in nanoseconds instead of milliseconds.
JoshRosen Apr 28, 2015
ce3c565
More comments, formatting, and code cleanup.
JoshRosen Apr 28, 2015
78a5b84
Add logging to MemoryManager
JoshRosen Apr 28, 2015
a19e066
Rename unsafe Java test suites to match Scala test naming convention.
JoshRosen Apr 28, 2015
de5e001
Fix debug vs. trace in logging message.
JoshRosen Apr 28, 2015
6e4b192
Remove an unused method from ByteArrayMethods.
JoshRosen Apr 28, 2015
70a39e4
Split MemoryManager into ExecutorMemoryManager and TaskMemoryManager:
JoshRosen Apr 28, 2015
50e9671
Throw memory leak warning even in case of error; add warning about co…
JoshRosen Apr 29, 2015
017b2dc
Remove BytesToBytesMap.finalize()
JoshRosen Apr 29, 2015
1bc36cc
Refactor UnsafeRowConverter to avoid unnecessary boxing.
JoshRosen Apr 29, 2015
81f34f8
Follow 'place children last' convention for GeneratedAggregate
JoshRosen Apr 29, 2015
eeee512
Add converters for Null, Boolean, Byte, and Short columns.
JoshRosen Apr 29, 2015
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Start prototyping Java Row -> UnsafeRow converters
  • Loading branch information
JoshRosen committed Apr 22, 2015
commit 53ba9b79e12a58f5c4ee217e434fbc20195ffc62
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,7 @@
import org.apache.spark.sql.types.StructType;
import org.apache.spark.unsafe.PlatformDependent;
import org.apache.spark.unsafe.bitset.BitSetMethods;
import org.apache.spark.unsafe.string.UTF8StringMethods;
import scala.collection.Map;
import scala.collection.Seq;

Expand Down Expand Up @@ -62,12 +63,16 @@ private long getFieldOffset(int ordinal) {
return baseOffset + bitSetWidthInBytes + ordinal * 8;
}

public static int calculateBitSetWidthInBytes(int numFields) {
return ((numFields / 64) + ((numFields % 64 == 0 ? 0 : 1))) * 8;
}

public UnsafeRow() { }

public void set(Object baseObject, long baseOffset, int numFields, StructType schema) {
assert numFields >= 0 : "numFields should >= 0";
assert schema == null || schema.fields().length == numFields;
this.bitSetWidthInBytes = ((numFields / 64) + ((numFields % 64 == 0 ? 0 : 1))) * 8;
this.bitSetWidthInBytes = calculateBitSetWidthInBytes(numFields);
this.baseObject = baseObject;
this.baseOffset = baseOffset;
this.numFields = numFields;
Expand Down Expand Up @@ -219,9 +224,11 @@ public double getDouble(int i) {
@Override
public String getString(int i) {
assertIndexIsValid(i);
// TODO

throw new UnsupportedOperationException();
final long offsetToStringSize = getLong(i);
final long stringSizeInBytes =
PlatformDependent.UNSAFE.getLong(baseObject, baseOffset + offsetToStringSize);
// TODO: ugly cast; figure out whether we'll support mega long strings
return UTF8StringMethods.toJavaString(baseObject, baseOffset + offsetToStringSize + 8, (int) stringSizeInBytes);
}

@Override
Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1,168 @@
/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/

package org.apache.spark.sql.catalyst.expressions

import org.apache.spark.sql.types._
import org.apache.spark.unsafe.PlatformDependent
import org.apache.spark.unsafe.array.ByteArrayMethods

/** Write a column into an UnsafeRow */
private abstract class UnsafeColumnWriter[T] {
/**
* Write a value into an UnsafeRow.
*
* @param value the value to write
* @param columnNumber what column to write it to
* @param row a pointer to the unsafe row
* @param baseObject
* @param baseOffset
* @param appendCursor the offset from the start of the unsafe row to the end of the row;
* used for calculating where variable-length data should be written
* @return the number of variable-length bytes written
*/
def write(
value: T,
columnNumber: Int,
row: UnsafeRow,
baseObject: Object,
baseOffset: Long,
appendCursor: Int): Int

/**
* Return the number of bytes that are needed to write this variable-length value.
*/
def getSize(value: T): Int
}

private object UnsafeColumnWriter {
def forType(dataType: DataType): UnsafeColumnWriter[_] = {
dataType match {
case IntegerType => IntUnsafeColumnWriter
case LongType => LongUnsafeColumnWriter
case StringType => StringUnsafeColumnWriter
case _ => throw new UnsupportedOperationException()
}
}
}

private class StringUnsafeColumnWriter private() extends UnsafeColumnWriter[UTF8String] {
def getSize(value: UTF8String): Int = {
// round to nearest word
val numBytes = value.getBytes.length
8 + ByteArrayMethods.roundNumberOfBytesToNearestWord(numBytes)
}

override def write(
value: UTF8String,
columnNumber: Int,
row: UnsafeRow,
baseObject: Object,
baseOffset: Long,
appendCursor: Int): Int = {
val numBytes = value.getBytes.length
PlatformDependent.UNSAFE.putLong(baseObject, baseOffset + appendCursor, numBytes)
PlatformDependent.copyMemory(
value.getBytes,
PlatformDependent.BYTE_ARRAY_OFFSET,
baseObject,
baseOffset + appendCursor + 8,
numBytes
)
row.setLong(columnNumber, appendCursor)
8 + ((numBytes / 8) + (if (numBytes % 8 == 0) 0 else 1)) * 8
}
}
private object StringUnsafeColumnWriter extends StringUnsafeColumnWriter

private abstract class PrimitiveUnsafeColumnWriter[T] extends UnsafeColumnWriter[T] {
def getSize(value: T): Int = 0
}

private class IntUnsafeColumnWriter private() extends PrimitiveUnsafeColumnWriter[Int] {
override def write(
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can u define the return value?

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The return value is the number of bytes written, which we use to increment the position cursor. I think that I commented on this in the base UnsafeColumnWriter class.

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More specifically, this is the number of variable-length bytes written. Primitive types, like int, don't write to the variable-length portion and thus return 0.

value: Int,
columnNumber: Int,
row: UnsafeRow,
baseObject: Object,
baseOffset: Long,
appendCursor: Int): Int = {
row.setInt(columnNumber, value)
0
}
}
private object IntUnsafeColumnWriter extends IntUnsafeColumnWriter

private class LongUnsafeColumnWriter private() extends PrimitiveUnsafeColumnWriter[Long] {
override def write(
value: Long,
columnNumber: Int,
row: UnsafeRow,
baseObject: Object,
baseOffset: Long,
appendCursor: Int): Int = {
row.setLong(columnNumber, value)
0
}
}
private case object LongUnsafeColumnWriter extends LongUnsafeColumnWriter


class UnsafeRowConverter(fieldTypes: Array[DataType]) {

private[this] val writers: Array[UnsafeColumnWriter[Any]] = {
fieldTypes.map(t => UnsafeColumnWriter.forType(t).asInstanceOf[UnsafeColumnWriter[Any]])
}

def getSizeRequirement(row: Row): Int = {
var fieldNumber = 0
var variableLengthFieldSize: Int = 0
while (fieldNumber < writers.length) {
if (!row.isNullAt(fieldNumber)) {
variableLengthFieldSize += writers(fieldNumber).getSize(row.get(fieldNumber))

}
fieldNumber += 1
}
(8 * fieldTypes.length) + UnsafeRow.calculateBitSetWidthInBytes(fieldTypes.length) + variableLengthFieldSize
}

def writeRow(row: Row, baseObject: Object, baseOffset: Long): Long = {
val unsafeRow = new UnsafeRow()
unsafeRow.set(baseObject, baseOffset, writers.length, null) // TODO: schema?
var fieldNumber = 0
var appendCursor: Int =
(8 * fieldTypes.length) + UnsafeRow.calculateBitSetWidthInBytes(fieldTypes.length)
while (fieldNumber < writers.length) {
if (row.isNullAt(fieldNumber)) {
unsafeRow.setNullAt(fieldNumber)
// TODO: type-specific null value writing?
} else {
appendCursor += writers(fieldNumber).write(
row.get(fieldNumber),
fieldNumber,
unsafeRow,
baseObject,
baseOffset,
appendCursor)
}
fieldNumber += 1
}
appendCursor
}

}
Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@
/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/

package org.apache.spark.sql.catalyst.expressions

import org.apache.spark.sql.types.{StringType, DataType, LongType, IntegerType}
import org.apache.spark.unsafe.PlatformDependent
import org.apache.spark.unsafe.array.ByteArrayMethods
import org.scalatest.{FunSuite, Matchers}


class UnsafeRowConverterSuite extends FunSuite with Matchers {

test("basic conversion with only primitive types") {
val fieldTypes: Array[DataType] = Array(LongType, LongType, IntegerType)
val row = new SpecificMutableRow(fieldTypes)
row.setLong(0, 0)
row.setLong(1, 1)
row.setInt(2, 2)
val converter = new UnsafeRowConverter(fieldTypes)
val sizeRequired: Int = converter.getSizeRequirement(row)
sizeRequired should be (8 + (3 * 8))
val buffer: Array[Long] = new Array[Long](sizeRequired / 8)
val numBytesWritten = converter.writeRow(row, buffer, PlatformDependent.LONG_ARRAY_OFFSET)
numBytesWritten should be (sizeRequired)
val unsafeRow = new UnsafeRow()
unsafeRow.set(buffer, PlatformDependent.LONG_ARRAY_OFFSET, fieldTypes.length, null)
unsafeRow.getLong(0) should be (0)
unsafeRow.getLong(1) should be (1)
unsafeRow.getInt(2) should be (2)
}

test("basic conversion with primitive and string types") {
val fieldTypes: Array[DataType] = Array(LongType, StringType, StringType)
val row = new SpecificMutableRow(fieldTypes)
row.setLong(0, 0)
row.setString(1, "Hello")
row.setString(2, "World")
val converter = new UnsafeRowConverter(fieldTypes)
val sizeRequired: Int = converter.getSizeRequirement(row)
sizeRequired should be (8 + (8 * 3) +
ByteArrayMethods.roundNumberOfBytesToNearestWord("Hello".getBytes.length + 8) +
ByteArrayMethods.roundNumberOfBytesToNearestWord("World".getBytes.length + 8))
val buffer: Array[Long] = new Array[Long](sizeRequired / 8)
val numBytesWritten = converter.writeRow(row, buffer, PlatformDependent.LONG_ARRAY_OFFSET)
numBytesWritten should be (sizeRequired)
val unsafeRow = new UnsafeRow()
unsafeRow.set(buffer, PlatformDependent.LONG_ARRAY_OFFSET, fieldTypes.length, null)
unsafeRow.getLong(0) should be (0)
unsafeRow.getString(1) should be ("Hello")
unsafeRow.getString(2) should be ("World")
}
}
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,15 @@ private ByteArrayMethods() {
// Private constructor, since this class only contains static methods.
}

public static int roundNumberOfBytesToNearestWord(int numBytes) {
int remainder = numBytes % 8;
if (remainder == 0) {
return numBytes;
} else {
return numBytes + (8 - remainder);
}
}

public static void zeroBytes(
Object baseObject,
long baseOffset,
Expand Down